Scotty - Datasets

The following datasets are available within Scotty:
Dataset Name Technology Strand Specific Control Reps Test Reps Accession Number Alignment Notes Reference Data File
Human Liver - Blekhman Illumina Poly ANo33GSE17274Human Genome NCBI Build 36 Trimmed to 32 basesControl condition are females Test condition are males Each sample was run in two technical replicates which we added Reference View
Human Lymphocyte Cell Line - CheungIllumina Poly ANo400GSE16921Human Genome NCBI Build 36The original experiment had 41 samples. For samples with two replicates we took only the first replicate. One sample failed to properly align. Reference View
Human Lymphocyte Cell Line - Kasowski All Cell Lines Only OnceIllumina Poly ANo100GSE19486Human Genome NCBI Build 36Where multiple biological replicates of the same cell line were included only one replicate of each is included Reference View
Human Lymphocyte Cell Line - Kasowski All DataIllumina Poly ANo140GSE19487Human Genome NCBI Build 36All lines are included Informational - Use unique for most power analyses Reference View
Yeast S. bayanus - BusbyAB SOLID Whole TranscriptomeYes20GSE32679Aligned to S. bayanus genome by Kellis et al. 2003Cultured in minimal media with reps grown in separate batches Reference View
Yeast S. cerevisiae - BusbyAB SOLID Whole TranscriptomeYes20GSE32679Aligned to genome from the Saccharomyces Genome Database downloaded on 1/28/2010Cultured in minimal media with reps grown in separate batches Reference View
Yeast S. mikatae - BusbyAB SOLID Whole TranscriptomeYes20GSE32679Aligned to S. mikatae genome by Kellis et al. 2003Cultured in minimal media with reps grown in separate batches Reference View
Yeast S. paradoxus - BusbyAB SOLID Whole TranscriptomeTes20GSE32679Aligned to S. paradoxus genome by Kellis et al. 2003Cultured in minimal media with reps grown in separate batches Reference View